FungalWeb

Empowering the Enzyme Biotechnologist with Ontologies

Introduction

The FungalWeb Ontology is a knowledge representation vehicle designed to integrate information relevant to industrial applications of enzymes. The ontology integrates information from established sources and supports complex queries to the instantiated FungalWeb knowledge base. The ontology represents prototype Semantic Web technology customized to the domain of industrial enzymes with a focus on enzyme discovery, commercial enzyme products and vendors, and the industrial applications and benefits of industrial enzymes. Using a series of application scenarios we demonstrate the utility of this 'Semantic Web' infrastructure to the enzyme biotechnologist.

The FungalWeb Ontology: Application Scenarios

Abstract

The FungalWeb Ontology aims to support the data integration needs of enzyme biotechnology from inception to product roll out. Serving as a knowledge base for decision support, the conceptualization seeks to link fungal species with enzymes, enzyme substrates, enzyme classifications, enzyme modifications, enzyme retail and applications. We demonstrate how the FungalWeb Ontology supports this remit by presenting application scenarios, conceptualizations of the ontological frame able to support these scenarios and semantic queries typical of a Biotech Manager. Queries to the knowledge base are answered with description logic (DL) and automated reasoning tools.

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